This reverts commit c1f9c5ef

branch

velocity distributions are added.

"PIC::IndividualModelSampling::RequestStaticCellData." because or recent
changes of PIC::IndividualModelSampling::RequestStaticCellData vector
definition

src/pic/pic_mesh.cpp, src/pic/pic_rnd.cpp, src/pic/pic_swmf.cpp
since PIC::IndividualModelSampling::RequestStaticCellData is used only
by the host, PIC::IndividualModelSampling::RequestStaticCellData is not
a pointer but a vector now. That simplifies the initialization of AMPS
when used as a component of the SWMF

srcInterface/PT_wrapper.f90, srcInterface/amps2swmf.cpp,
srcInterface/amps2swmf.h, srcInterface/amps_param_interface.cpp: updated
from the naster branch

2. srcSEP is updated from the master branch

according to that in test_Mercury-ions in the CUDA-DEV branch. The
sequance in CUDA-DEV branch is affected my allocation of the mesh table
and cannot be changed. The changed is done in preparation to CUDA-DEV ->
master branch transitioning

2. memcpy() is replaced with PIC::ParticleBuffer::CloneParticle()

copy of commit 75009a0a to the master
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2. memcpy() is replaced with PIC::ParticleBuffer::CloneParticle()

2. memcpy() is replaced with PIC::ParticleBuffer::CloneParticle()

copy of commit 3f54134e in the master
branch

2. memcpy() is replaced with PIC::ParticleBuffer::CloneParticle()

1. char tempParticleData is replaced with PIC::ParticleBuffer::byte
tempParticleData
2. tempParticleData is initialized 'tempParticleData[ii]=0' begore used
3. memcpy() is replaced with PIC::ParticleBuffer::CloneParticle()

copy of commit 60dad1a0 to the master
branch

1. char tempParticleData is replaced with PIC::ParticleBuffer::byte
tempParticleData
2. tempParticleData is initialized 'tempParticleData[ii]=0' begore used
3. memcpy() is replaced with PIC::ParticleBuffer::CloneParticle()

print checksum of the particle buffer
2. Exosphere::SourceProcesses::InjectionBoundaryModel():
   a) buffer tempParticleData is cleaned before use
   b) 'memcpy' is replaced with PIC::ParticleBuffer::CloneParticle()
when copy particle properties from tempParticleData to the particle data
buffer

copy of commit 64faab33 to the master
branch

print checksum of the particle buffer
2. Exosphere::SourceProcesses::InjectionBoundaryModel():
   a) buffer tempParticleData is cleaned before use
   b) 'memcpy' is replaced with PIC::ParticleBuffer::CloneParticle()
when copy particle properties from tempParticleData to the particle data
buffer

2. input/earth.input.pl is correctedo

copy of commit c17f537d to CUDA-DEV
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2. input/earth.input.pl is corrected

of srcMars model used for Mars-Hot-Oxygen simulation wich is not
compatible with the current implementations of AMPS

copy of commit 6a099bac to the master
branch

of srcMars model used for Mars-Hot-Oxygen simulation wich is not
compatible with the current implementations of AMPS

is set to zeto after allocation

copy of commit b38d8b70 to the master
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is set to zeto after allocation

       if (_PIC_COUPLER__INTERPOLATION_MODE_ !=
    _PIC_COUPLER__INTERPOLATION_MODE__CELL_CENTERED_LINEAR_) {
         exit(__LINE__,__FILE__,"Error: the function should be used only
    when the linear interpolation routine is set");
       }
    is commented at the beginning of the function. Now
    test_linear-system-solver.diff passes.

copy of commit b87155d3 to the master
branch

   if (_PIC_COUPLER__INTERPOLATION_MODE_ !=
_PIC_COUPLER__INTERPOLATION_MODE__CELL_CENTERED_LINEAR_) {
     exit(__LINE__,__FILE__,"Error: the function should be used only
when the linear interpolation routine is set");
   }
is commented at the beginning of the function. Now
test_linear-system-solver.diff passes.

when _PIC_COUPLER_MODE_ == _PIC_COUPLER_MODE__SWMF_